The potential for timing attacks has been known since the beginning of Tor. In other words, more than a decade. But that doesn't mean you can't defend against it. One way to defend against it is by having more nodes. Another way is to write clients that take into account the potential for timing attacks. Both of these were specifically mentioned in the article.
Based on what was in the article and what's in the history books, I'm not sure how to interpret your comment in a constructive way. Is there anything more specific you meant, that isn't contradicted by what's in the article?
The TOR network itself is safe - at least assuming the TLAs don't control at least half of the nodes, which is far from impossible. But let's assume...
The weak point comes from the browser: that's how the fuzz deanonymizes users. The only safe browser to use on TOR is the TOR browser, and that's the problem: it disables so many unsafe functionalities that it's essentially unusable on a lot of websites. So people use regular browsers over TOR, the browser leaks identifying data and that's how they get caught.
I mean, the advice I've heard for one who's threat model is "the feds are actively trying to identify me" is to have a dedicated burner computer that you do all of your illegal activities on and no other activities. Then of course on top of that avoid saving secrets onto the device and type them in manually every time (ephemeral distros like Tails are good for that)
As I read, they used timing analysis which should be preventable by using an anonymous VPN to connect to tor and streaming something over the VPN connection at the same time. Some of them support multi-hop, like mullvad, which will further complicate the timing analysis because of the aggregated traffic.
If I understand correctly, stream isolation will route different connections through different circuits. If you're doing two different things of a sensitive nature, open different browsers and applications, use random user-induced delays in your actions/responses and PGP-encrypt everything. And listen to what the TOR project says about the mitigations. I have some reading to do myself I guess
I have considered Tor safe for illicit activities for at least half a decade. Luckily, there's no need for me to be on there. But this is bad news for people living in places where speech is heavily regulated plus journalists and would-be whistle-blowers.