In Linux, you can execute multiple commands simultaneously by running them in parallel. This can help improve the overall execution time and efficiency of your tasks. In this tutorial, we will explore different methods to run commands in parallel in a Linux environment.
Method 1: Using & (ampersand) symbol
The simplest way to run commands in parallel is by appending the & symbol at the end of each command. Here's how you can do it:
command_1 & command_2 & command_3 &
This syntax allows each command to run in the background, enabling parallel execution. The shell will immediately return the command prompt, and the commands will execute concurrently.
For example, to compress three different files in parallel using the gzip command:
The xargs command is useful for building and executing commands from standard input. By utilizing its -P option, you can specify the maximum number of commands to run in parallel. Here's an example:
In this example, we use the echo command to generate a list of commands separated by newline characters. This list is then piped (|) to xargs, which executes each command in parallel. The -P 3 option indicates that a maximum of three commands should run concurrently. Adjust the number according to your requirements.
For instance, to run three different wget commands in parallel to download files:
GNU Parallel is a powerful tool specifically designed to run jobs in parallel. It provides extensive features and flexibility. To use GNU Parallel, follow these steps:
Install GNU Parallel if it's not already installed. You can typically find it in your Linux distribution's package manager.
Create a file (e.g., commands.txt) and add one command per line:
command_1
command_2
command_3
Run the following command to execute the commands in parallel:
parallel -j 3 < commands.txt
The -j 3 option specifies the maximum number of parallel jobs to run. Adjust it according to your needs.
For example, if you have a file called urls.txt containing URLs and you want to download them in parallel using wget:
parallel -j 3 wget {} < urls.txt
GNU Parallel also offers numerous advanced options for complex parallel job management. Refer to its documentation for further information.
Conclusion
Running commands in parallel can significantly speed up your tasks by utilizing the available resources efficiently. In this tutorial, you've learned three methods for running commands in parallel in Linux:
Using the & symbol to run commands in the background.
Utilizing xargs with the -P option to define the maximum parallelism.
Using GNU Parallel for advanced parallel job management.
Choose the method that best suits your requirements and optimize your workflow by executing commands concurrently.
For anyone else reading this, please make sure this tool is correct for your HPC.
I would be annoyed at my users if they tried using any of these tools without fully understanding it fully and judging using the scheduler Vs paralellism correctly.
Absolutely! Sometimes its just easier for me to keep jobs in a single list and run them on a big fat node rather than array submit and block half the queue!