For non steam games how do you sync saves between Steam Deck and Desktop?
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If you have cloud storage available, either by a company or self-hosted, you can look into Ludusavi and OpenCloudSaves, both open source and using the same savegame path database.
Ludusavi is more mature with more features.
OpenCloudSaves aims to target better usability with the Deck specifically.
+1 to Ludusavi. It auto detects savegame paths based on pcgamingwiki. Great design!